PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS3609393 to PF06568 (DUF1127)

VIMSS3609393 has 72 amino acids

Query:       DUF1127  [M=37]
Accession:   PF06568.15
Description: Domain of unknown function (DUF1127)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-14   39.0  10.8    1.5e-13   36.6  10.4    2.2  2  VIMSS3609393  


Domain annotation for each sequence (and alignments):
>> VIMSS3609393  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1     0.017     0.017      14      21 ..      20      27 ..      11      28 .. 0.81
   2 !   36.6  10.4   1.5e-13   1.5e-13      11      36 ..      30      55 ..      21      56 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.017
       DUF1127 14 trreLarL 21
                  +rr+L++L
  VIMSS3609393 20 SRRALSAL 27
                  58888887 PP

  == domain 2  score: 36.6 bits;  conditional E-value: 1.5e-13
       DUF1127 11 rRrtrreLarLsDreLaDIGLsRsdi 36
                   +rtrr+L++L+Dr+L+DIG+sRs++
  VIMSS3609393 30 LWRTRRALRDLDDRMLRDIGVSRSEA 55
                  79**********************97 PP



Or compare VIMSS3609393 to CDD or PaperBLAST