PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS621438 to PF06572 (DUF1131)

VIMSS621438 has 203 amino acids

Query:       DUF1131  [M=170]
Accession:   PF06572.16
Description: Protein of unknown function (DUF1131)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-90  287.8   0.1    1.5e-90  287.6   0.1    1.0  1  VIMSS621438  


Domain annotation for each sequence (and alignments):
>> VIMSS621438  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.6   0.1   1.5e-90   1.5e-90       2     170 .]      30     200 ..      29     200 .. 0.98

  Alignments for each domain:
  == domain 1  score: 287.6 bits;  conditional E-value: 1.5e-90
      DUF1131   2 lsWsslsPlnWf..gsslkvteqGvgelnastaltesaiekaldgdyrlrsGmktenGqlvkvfealkddkvklvisGqekgkverievldkdikses 97 
                  +sWsslsPlnWf  + s++vteqGvg+++ast ltes+i+++l+gdyrlrsGm+t++G+lv++++alk+d++klvisGq+kg+veri+v+dk i+s++
  VIMSS621438  30 FSWSSLSPLNWFsgSRSMQVTEQGVGGITASTLLTESDINAGLQGDYRLRSGMATNDGKLVSFYQALKEDQIKLVISGQPKGQVERIDVMDKGIPSQW 127
                  89**********544589******************************************************************************** PP

      DUF1131  98 gvkiGtafsdlyskafgackkasgddkasveckapqskhvsylfsGeWsGPeglmPsddilknWkvskivWrr 170
                  gv+iGt+fsdly+kafgac+k++gdd+++vec+ap+skhvsylf+G+W+GPe+lmPsdd+l++W+vski+Wr+
  VIMSS621438 128 GVTIGTPFSDLYKKAFGACHKGRGDDVNQVECVAPESKHVSYLFNGNWHGPEELMPSDDALQSWTVSKIIWRA 200
                  ***********************************************************************95 PP



Or compare VIMSS621438 to CDD or PaperBLAST