PaperBLAST – Find papers about a protein or its homologs

 

Align REBASE::M.Vsp61001IV to PF06634 (DUF1156)

REBASE::M.Vsp61001IV has 1000 amino acids

Query:       DUF1156  [M=73]
Accession:   PF06634.16
Description: Protein of unknown function (DUF1156)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence             Description
    ------- ------ -----    ------- ------ -----   ---- --  --------             -----------
    9.3e-23   66.5   0.0    2.6e-22   65.1   0.0    1.8  1  REBASE::M.Vsp61001IV  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Vsp61001IV  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.0   2.6e-22   2.6e-22       1      72 [.      19      81 ..      19      82 .. 0.94

  Alignments for each domain:
  == domain 1  score: 65.1 bits;  conditional E-value: 2.6e-22
               DUF1156  1 alPldkinaesakEksirhgqhlstLhlwW.aRrPLaavRAvilaqLvpapsseleegktkeeaeaererlfk 72
                          ++P +k++ e++kE++++ gq+l++L+++W +R+PL++vR v+l++L+p           ++++e+++e++++
  REBASE::M.Vsp61001IV 19 VFPAQKVSFEAQKERKANLGQTLTGLGSYWkGRKPLILVRSVVLGSLLPQ----------TNDTEKDLEIFEM 81
                          59************************************************..........8888999988875 PP



Or compare REBASE::M.Vsp61001IV to CDD or PaperBLAST