PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS2199251 to PF06672 (DUF1175)

VIMSS2199251 has 212 amino acids

Query:       DUF1175  [M=218]
Accession:   PF06672.15
Description: Protein of unknown function (DUF1175)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-76  242.8   0.0    1.9e-76  242.6   0.0    1.0  1  VIMSS2199251  


Domain annotation for each sequence (and alignments):
>> VIMSS2199251  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.6   0.0   1.9e-76   1.9e-76      15     217 ..      21     210 ..      15     211 .. 0.97

  Alignments for each domain:
  == domain 1  score: 242.6 bits;  conditional E-value: 1.9e-76
       DUF1175  15 gdplallspedseafRewfvriaesqirre.tsrweeeerDCaglvRfavrEalkkhdarwlkksgisvedvekylyPelplvgaklfriekgkyrs 110
                   g+p   l+p++s+ fR+wfvria++q+r++ ++rw  +++DCaglvRfa++Ealk hd++wl+++g+s    ++yl+Pel l+ +++  +++++ + 
  VIMSS2199251  21 GEPPVALDPQQSQVFRAWFVRIAQEQLRQGpSPRW--HQQDCAGLVRFAANEALKVHDGKWLRANGLS----NRYLPPELALSPEQRRLAQNWQ-QG 110
                   567789************************99***..*******************************....9*********************.9* PP

       DUF1175 111 dgefgafadAktlveenlrfvskdveeAlpgDlvFfkqeddesPyHlmifvgddaeelivYHtGpegesdgelRaVrlseLlklkDprWrPlekNpn 207
                    g++g++++A+ lv++n+r v++d+++A+pgDl+F++q+dd+   Hlmi++g+     i+YHtG+ + +d+++R V+l++L+ +kD+rW P+e+Npn
  VIMSS2199251 111 GGQVGPYVNAIKLVQFNSRLVGRDLNQARPGDLMFYDQGDDQ---HLMIWMGR----SIAYHTGSSTPTDNGMRSVSLQQLMTWKDTRWIPDESNPN 200
                   ******************************************...********....9*************************************** PP

       DUF1175 208 FlGvyrlkfl 217
                   F+G+yrl+fl
  VIMSS2199251 201 FIGIYRLAFL 210
                   *********9 PP



Or compare VIMSS2199251 to CDD or PaperBLAST