NP_060384.3 has 132 amino acids
Query: DUF1180 [M=167]
Accession: PF06679.16
Description: Protein of unknown function (DUF1180)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.3e-15 43.1 4.9 3.7e-12 33.1 0.0 2.0 2 NP_060384.3
Domain annotation for each sequence (and alignments):
>> NP_060384.3
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 9.4 4.1 7.6e-05 7.6e-05 7 60 .. 11 62 .. 5 71 .. 0.65
2 ! 33.1 0.0 3.7e-12 3.7e-12 99 163 .. 71 129 .. 63 132 .] 0.85
Alignments for each domain:
== domain 1 score: 9.4 bits; conditional E-value: 7.6e-05
DUF1180 7 lalLLllLLaaaaaeasralspaasqpeaepPlppgataaespgkataleaasa 60
l+lLL+lLL aa ++++sp +++ + +P p t + +pg ++ ++ +
NP_060384.3 11 LLLLLALLL-AALPCGAEEASPLRPAQVTLSPP-PAVTNGSQPGAPHNSTHTRP 62
345555555.78888888999999999999887.55777777765554433333 PP
== domain 2 score: 33.1 bits; conditional E-value: 3.7e-12
DUF1180 99 qralivlvvvsaavivylvvRtvrmrrrnrktRrYgvldtnienmEltPLeqdDedddntlFdan 163
r ++v++ + ++ +y+++R +r+++ + RrYg+l + E++ L+ d ++t+F+ +
NP_060384.3 71 TRSFYVILGFCGLTALYFLIRAFRLKK--PQRRRYGLLANTEDPTEMASLDSD----EETVFESR 129
689**********************44..5569*****999999******875....45777766 PP
Or compare NP_060384.3 to CDD or PaperBLAST