PaperBLAST – Find papers about a protein or its homologs

 

Align XP_052742279.1 to PF06722 (EryCIII-like_C)

XP_052742279.1 has 1225 amino acids

Query:       EryCIII-like_C  [M=145]
Accession:   PF06722.16
Description: Erythromycin biosynthesis protein CIII-like, C-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.3e-37  113.4   0.0    5.5e-16   44.9   0.0    3.3  3  XP_052742279.1  


Domain annotation for each sequence (and alignments):
>> XP_052742279.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   3.1e-10   3.1e-10      49     114 ..       8      73 ..       2      98 .. 0.87
   2 !   44.9   0.0   5.5e-16   5.5e-16       3     133 ..     495     623 ..     493     630 .. 0.86
   3 !   38.2   0.0   6.5e-14   6.5e-14       3     133 ..    1013    1141 ..    1011    1144 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 3.1e-10
  EryCIII-like_C  49 aaivHhgGagstltalsfGvPqvvlpdeadaavrarrvaelGagivlskdeltsdsiakavaevve 114
                      ai  h G  s++ a+++GvP + +p + d++ +a ++ e+G g+ +++delt +++ +  + v++
  XP_052742279.1   8 LAIFCHCGLLSLTEAIHHGVPVIGMPVFGDQPRNAAAIEETGLGVQIQVDELTKETLLEKFETVLN 73 
                     5788899999**********************************************9997777664 PP

  == domain 2  score: 44.9 bits;  conditional E-value: 5.5e-16
  EryCIII-like_C   3 vldqvaelDaEivvaldedarpdlrelpdnvRlvdfvPlgvll..ptcaaivHhgGagstltalsfGvPqvvlpdeadaavrarrvaelGagivl 95 
                     ++d+++++ + ++ + +e++   l   p+n+ l  ++P +++l  p+  a+  h G   t+ a+ +GvP v +p + d++++a +v e G g+ +
  XP_052742279.1 495 IIDALSKFPQRVIWKWEESS---LPGNPKNIYLSKWLPQNDILahPNVLAFYSHCGMLGTTEAINYGVPMVAMPIFGDQPANAAAVEESGLGVQI 586
                     66777777777777755554...5568**************99445777888999999999********************************** PP

  EryCIII-like_C  96 skdeltsdsiakavaevvedpayraaaaklaeeiaaeP 133
                     + ++lts++++k ++ v+ dp +ra  + l +   ++P
  XP_052742279.1 587 QIPDLTSENLQKKLKTVL-DPKFRAHVKTLSKAWRDRP 623
                     ************999877.899***9999988777777 PP

  == domain 3  score: 38.2 bits;  conditional E-value: 6.5e-14
  EryCIII-like_C    3 vldqvaelDaEivvaldedarpdlrelpdnvRlvdfvPlgvll..ptcaaivHhgGagstltalsfGvPqvvlpdeadaavrarrvaelGagi 93  
                      +++++ael + ++   ++   + l   p+nv l  ++P +++l  p   a+  h G   t+ a+ +GvP v +p   d+  +a ++ e G g+
  XP_052742279.1 1013 IINALAELPQRVIWRWNK---KSLPGDPKNVFLSKWLPQNDILahPKVIAFFSHCGLLGTTEAMYHGVPIVGMPIYGDQSSNAAAIEESGLGV 1102
                      566777777777777444...445567***************93345567788999999999******************************* PP

  EryCIII-like_C   94 vlskdeltsdsiakavaevvedpayraaaaklaeeiaaeP 133 
                       ++ d lt + + +   ++v dp +r+ a+kl e   ++P
  XP_052742279.1 1103 QIPLDMLTKEYLLQK-FKIVLDPEFRQKAKKLSEAWHDRP 1141
                      ***********9995.578889**********99887777 PP



Or compare XP_052742279.1 to CDD or PaperBLAST