PaperBLAST – Find papers about a protein or its homologs

 

Align biolip::3otiA to PF06722 (EryCIII-like_C)

biolip::3otiA has 379 amino acids

Query:       EryCIII-like_C  [M=145]
Accession:   PF06722.16
Description: Erythromycin biosynthesis protein CIII-like, C-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.8e-41  125.4   1.1    4.8e-40  123.0   0.4    2.1  2  biolip::3otiA  


Domain annotation for each sequence (and alignments):
>> biolip::3otiA  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.027     0.027      52      89 ..     117     156 ..     112     176 .. 0.71
   2 !  123.0   0.4   4.8e-40   4.8e-40       3     144 ..     237     376 ..     235     377 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.027
  EryCIII-like_C  52 vHhgGag.stltalsfGvPqvvlpde.adaavrarrvael 89 
                     v + Ga+  +l+a  +GvP v   +  +++  + r +a +
   biolip::3otiA 117 VYEQGATvGLLAADRAGVPAVQRNQSaWRTRGMHRSIASF 156
                     5555554157788899****99988778888888877766 PP

  == domain 2  score: 123.0 bits;  conditional E-value: 4.8e-40
  EryCIII-like_C   3 vldqvaelDaEivvaldedarpdlrelpdnvRlvdfvPlgvllptcaaivHhgGagstltalsfGvPqvvlpdeadaavra..rrvaelGagivl 95 
                     ++++++e+Da+ v+al +   + l+ lp nvR v++ Pl+ ll tc+a+vHhgG+g+++ta+ +G+Pq++ pd+ d++ ++  ++v  +G g+v 
   biolip::3otiA 237 IIAAAGEVDADFVLALGDLDISPLGTLPRNVRAVGWTPLHTLLRTCTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTarEAVSRRGIGLVS 331
                     67899*********************************************************************98876541256889******* PP

  EryCIII-like_C  96 skdeltsdsiakavaevvedpayraaaaklaeeiaaePsPtEvakklee 144
                     + d++++d +++    +++d+++r aa +++ee++a P+P+E +++++e
   biolip::3otiA 332 TSDKVDADLLRR----LIGDESLRTAAREVREEMVALPTPAETVRRIVE 376
                     **********99....*****************************9986 PP



Or compare biolip::3otiA to CDD or PaperBLAST