PaperBLAST – Find papers about a protein or its homologs

 

Align NP_649970.1 to PF06784 (UPF0240)

NP_649970.1 has 203 amino acids

Query:       UPF0240  [M=173]
Accession:   PF06784.15
Description: Uncharacterised protein family (UPF0240)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      6e-70  220.9   0.6    7.1e-70  220.6   0.6    1.0  1  NP_649970.1  


Domain annotation for each sequence (and alignments):
>> NP_649970.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.6   0.6   7.1e-70   7.1e-70       1     173 []       1     178 [.       1     178 [. 0.96

  Alignments for each domain:
  == domain 1  score: 220.6 bits;  conditional E-value: 7.1e-70
      UPF0240   1 mgavlslvaRpvrnfnvEnRaekviskeKPkpAPkhpstekkleevleekpeikeelskkdeqLlsrLkdvyVeSkdpv.skve....aeqeekkkee 93 
                  mg+v+s+vaR  ++fnvEnRa++v+++eKP+pAPk++s+ +++e++le +p++ ++l+ kd++L+ rLkdvyV+S+d++ ++v+    ae++  + e+
  NP_649970.1   1 MGQVVSMVARRANRFNVENRAHRVLEREKPTPAPKFDSNLRDMERTLELDPKFVDKLNMKDSSLDGRLKDVYVTSQDRFiKRVQerqaAEAAADNVEQ 98 
                  9*****************************************************************************99888867666666677789 PP

      UPF0240  94 rrlpksrskvedfefgllepekvpkGkitlrqalellsnhqadpekwtaekiakeYkLeekdvknllkyFktFevkiPek 173
                  r+lp +r++++dfe+g+lep++++ G++tlrqal+++++hq dpe w a+kia+eYkL+e  v+n+l+yFktF+++iP++
  NP_649970.1  99 RPLPLERKTPDDFEYGYLEPNRISPGHCTLRQALKFINDHQLDPESWPAKKIANEYKLKEPLVENILHYFKTFNMYIPDQ 178
                  ******************************************************************************85 PP



Or compare NP_649970.1 to CDD or PaperBLAST