PaperBLAST – Find papers about a protein or its homologs

 

Align SwissProt::Q9NQR8 to PF06784 (UPF0240)

SwissProt::Q9NQR8 has 174 amino acids

Query:       UPF0240  [M=173]
Accession:   PF06784.15
Description: Uncharacterised protein family (UPF0240)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    3.2e-65  205.5   2.5    3.7e-65  205.3   2.5    1.0  1  SwissProt::Q9NQR8  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q9NQR8  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.3   2.5   3.7e-65   3.7e-65       1     172 [.       1     165 [.       1     167 [. 0.92

  Alignments for each domain:
  == domain 1  score: 205.3 bits;  conditional E-value: 3.7e-65
            UPF0240   1 mgavlslvaRpvrnfnvEnRaekviskeKPkpAPkhpstekkleevleekpeikeelskkdeqLlsrLkdvyVeSkdpv.skve.aeqeekk 90 
                        mga   +++R++rnfnvE+Rae++isk+KP++APkhpst++ l+e+l+++pei+ee+s+kd++Lls+L+dvyV+Skdpv s  + a + +++
  SwissProt::Q9NQR8   1 MGA---RMTRAFRNFNVEKRAEQEISKRKPSMAPKHPSTRSLLQEHLSQYPEIEEEVSRKDNKLLSLLRDVYVNSKDPVpSLPVkAIEPQQQ 89 
                        788...************************************************************************97665534444555 PP

            UPF0240  91 keerrlpksrskvedfefgllepekvpkGkitlrqalellsnhqadpekwtaekiakeYkLeekdvknllkyFktFevki.Pe 172
                         +e rlp  +      +f+ ++++++pkGkit+++al+ll+nh+ +pe+wtaekia+eY+Le +dv++llkyF+tFevki P+
  SwissProt::Q9NQR8  90 PKEFRLPIGD------QFD-KNIKDIPKGKITVVEALTLLNNHKLSPETWTAEKIAQEYHLELEDVNSLLKYFVTFEVKIvPP 165
                        5678888886......898.89**********************************************************965 PP



Or compare SwissProt::Q9NQR8 to CDD or PaperBLAST