PaperBLAST – Find papers about a protein or its homologs

 

Align NP_047440.1 to PF06851 (DUF1247)

NP_047440.1 has 215 amino acids

Query:       DUF1247  [M=149]
Accession:   PF06851.15
Description: Protein of unknown function (DUF1247)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   8.9e-108  342.9   5.1   1.1e-107  342.6   5.1    1.1  1  NP_047440.1  


Domain annotation for each sequence (and alignments):
>> NP_047440.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  342.6   5.1  1.1e-107  1.1e-107       1     149 []      65     213 ..      65     213 .. 1.00

  Alignments for each domain:
  == domain 1  score: 342.6 bits;  conditional E-value: 1.1e-107
      DUF1247   1 lgevidtmgqqgkllpeiieadddfkvnqtrnlscktveylnflendklfrcrlcythadwlwcdfhrnhayrgtrditcnnyvehlnsdmgvvmlie 98 
                  lgevid+mgqqg+llpeiieadddfkvnqtrnlscktveylnflendklfrcrlcythadwlwcdfhrnhayrgtrdi+cnnyvehlnsdmgvvml+e
  NP_047440.1  65 LGEVIDAMGQQGRLLPEIIEADDDFKVNQTRNLSCKTVEYLNFLENDKLFRCRLCYTHADWLWCDFHRNHAYRGTRDIACNNYVEHLNSDMGVVMLVE 162
                  8************************************************************************************************* PP

      DUF1247  99 eyfyclsscnfkqdakralqtltkfeslsdlmasynfstpdldtnayelmd 149
                  eyfyclsscnfkqdak alqtlt+feslsdlmasynfstpdldtnayelmd
  NP_047440.1 163 EYFYCLSSCNFKQDAKLALQTLTNFESLSDLMASYNFSTPDLDTNAYELMD 213
                  **************************************************8 PP



Or compare NP_047440.1 to CDD or PaperBLAST