PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS6578587 to PF06916 (FAM210A-B_dom)

VIMSS6578587 has 167 amino acids

Query:       FAM210A-B_dom  [M=88]
Accession:   PF06916.17
Description: FAM210A/B-like domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-28   85.2   0.0    2.5e-28   84.7   0.0    1.2  1  VIMSS6578587  


Domain annotation for each sequence (and alignments):
>> VIMSS6578587  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   0.0   2.5e-28   2.5e-28       1      87 [.      52     154 ..      52     155 .. 0.98

  Alignments for each domain:
  == domain 1  score: 84.7 bits;  conditional E-value: 2.5e-28
  FAM210A-B_dom   1 qklKelfkkYGkvalgvylsislislgifYllvks.gvd.vealleklgls..............ekkvekksksswgelaiAYaihKilapiRlp 80 
                    q++Kel+kkYG+++lgvy++is++++++ ++lv++ g++ + +l++++  s              + + e  ++s w+ela+AY ihK+l+++R+p
   VIMSS6578587  52 QRVKELTKKYGWWSLGVYIGISVLDFSASFVLVRTlGAErIGYLEHSILNSirryfnweipestaSGEPEAYHSSIWTELAFAYGIHKALVVARVP 147
                    79**************************************************************9999**************************** PP

  FAM210A-B_dom  81 iTlaltp 87 
                    +T+a++p
   VIMSS6578587 148 LTAAIVP 154
                    ******9 PP



Or compare VIMSS6578587 to CDD or PaperBLAST