PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS3788319 to PF06998 (DUF1307)

VIMSS3788319 has 172 amino acids

Query:       DUF1307  [M=123]
Accession:   PF06998.15
Description: Protein of unknown function (DUF1307)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      6e-37  112.8  10.8    7.3e-37  112.5  10.8    1.1  1  VIMSS3788319  


Domain annotation for each sequence (and alignments):
>> VIMSS3788319  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.5  10.8   7.3e-37   7.3e-37       8     123 .]      40     160 ..      30     160 .. 0.94

  Alignments for each domain:
  == domain 1  score: 112.5 bits;  conditional E-value: 7.3e-37
       DUF1307   8 eenGveikltytykgDkvlkqtaeskikysalgvetkee.....akklleslsekYqgikGveekldykdekaiekvdidyekadldelkkllgist 99 
                   + n  +++lty++kgD v+kqt+e+ i+y++lg+++++e     ak ++e+ls++Yq +kG++ek+ +  + ++e+++idy+kadl+el++l+g+++
  VIMSS3788319  40 QSNQFDMRLTYYHKGDIVTKQTTENFISYKSLGIDESQEeqknaAKAKIEELSKQYQTVKGIKEKVSFDKNGIKENIEIDYDKADLKELASLPGMMI 136
                   478899****************************99877789999**************************************************** PP

       DUF1307 100 dgedtskgiSlkkteklleaqGyk 123
                   ++e+++k+iS+k + ++le++G+k
  VIMSS3788319 137 SNEKNAKKISMKASGEALEKSGFK 160
                   ***********************7 PP



Or compare VIMSS3788319 to CDD or PaperBLAST