PaperBLAST – Find papers about a protein or its homologs

 

Align NP_001330202.1 to PF07039 (SGF29_Tudor)

NP_001330202.1 has 301 amino acids

Query:       SGF29_Tudor  [M=132]
Accession:   PF07039.15
Description: SGF29 tudor-like domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-29   88.2   0.1    5.8e-29   87.0   0.0    1.6  2  NP_001330202.1  


Domain annotation for each sequence (and alignments):
>> NP_001330202.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.47      0.47      46      64 ..     104     121 ..      98     129 .. 0.51
   2 !   87.0   0.0   5.8e-29   5.8e-29       1     102 [.     134     235 ..     134     244 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.47
     SGF29_Tudor  46 ekekkryklsakeiiplpk 64 
                     ++++kr+k+  +++i+l  
  NP_001330202.1 104 DQKRKRMKV-DSDVIRLSP 121
                     333333333.456666654 PP

  == domain 2  score: 87.0 bits;  conditional E-value: 5.8e-29
     SGF29_Tudor   1 kgeeVaakekkkekeeeeewilaeVvkgegkknrYeveDadpdee..ekekkryklsakeiiplpkekakpetlaefpkgkkVLAlYPeTTtFYk 93 
                     kge+Vaa+ ++ e+++++ew++++V+++++++++ ev D++p ++  ++++++ykl++  i+p+pk+++ ++ ++efp+gk+VLA+YP TT++Yk
  NP_001330202.1 134 KGEQVAARVTA-ESADKDEWFVVKVIHFDRETKEVEVLDEEPGDDeeGSGQRTYKLPMLCILPFPKRNDPSN-TQEFPPGKHVLAVYPGTTALYK 226
                     699****7666.79999************************877767889999*************999855.56******************** PP

     SGF29_Tudor  94 AeVvsspkk 102
                     A+Vvs+p+k
  NP_001330202.1 227 ATVVSTPRK 235
                     *****9965 PP



Or compare NP_001330202.1 to CDD or PaperBLAST