PaperBLAST – Find papers about a protein or its homologs

 

Align NP_009917.1 to PF07039 (SGF29_Tudor)

NP_009917.1 has 259 amino acids

Query:       SGF29_Tudor  [M=132]
Accession:   PF07039.15
Description: SGF29 tudor-like domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-40  123.7   0.0    5.9e-40  122.6   0.0    1.6  2  NP_009917.1  


Domain annotation for each sequence (and alignments):
>> NP_009917.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.44      0.44      56      70 ..      18      32 ..      13      45 .. 0.62
   2 !  122.6   0.0   5.9e-40   5.9e-40       2     131 ..     128     249 ..     127     250 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.44
  SGF29_Tudor 56 akeiiplpkekakpe 70
                 a+e+ip+ +e ++++
  NP_009917.1 18 ANEVIPFDDELQTKK 32
                 567777766666543 PP

  == domain 2  score: 122.6 bits;  conditional E-value: 5.9e-40
  SGF29_Tudor   2 geeVaakekkkekeeeeewilaeVvkgegkknrYeveDadpdeeekekkryklsakeiiplpkekakpetlaefpkgkkVLAlYPeTTtFYkAeVvss 99 
                  g+eVa+k+++   ++++ewi++eV+k+ ++ +r+ev+D++pde +++ k yk+++ke++ +p    +    +++p+g+kVLA+YPeTTtFY+A+V++ 
  NP_009917.1 128 GSEVAYKPRR--GSADGEWIQCEVLKVVADGTRFEVRDPEPDELGNSGKVYKCNRKELLLIPPGFPT----KNYPPGTKVLARYPETTTFYPAIVIG- 218
                  89****8877..689***********99999*************888899************98887....69************************. PP

  SGF29_Tudor 100 pkkkeeeyklkFeddeeedkereVerryVvel 131
                   +k++++++l+F+++ee dke+eV+rr+V++ 
  NP_009917.1 219 -TKRDGTCRLRFDGEEEVDKETEVTRRLVLPS 249
                  .789*************************986 PP



Or compare NP_009917.1 to CDD or PaperBLAST