PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10081084 to PF07063 (DUF1338)

VIMSS10081084 has 310 amino acids

Query:       DUF1338  [M=169]
Accession:   PF07063.17
Description: Domain of unknown function (DUF1338), C-terminal
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-30   92.6   0.0    5.8e-29   87.6   0.1    2.6  2  VIMSS10081084  


Domain annotation for each sequence (and alignments):
>> VIMSS10081084  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0     0.097     0.097      29      50 ..      56      82 ..      51      92 .. 0.74
   2 !   87.6   0.1   5.8e-29   5.8e-29       3     168 ..     167     304 ..     166     305 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.097
        DUF1338 29 NHlTprvl.....didavqealeergi 50
                    H+T r+l      id++ ++  + g+
  VIMSS10081084 56 DHFTFRTLkvdgyGIDSLSSFFMAYGY 82
                   6*******6666666666666666665 PP

  == domain 2  score: 87.6 bits;  conditional E-value: 5.8e-29
        DUF1338   3 sledyeeLkeeselaAdvvsfegyhiNHlTprvl.......didavqealeergiklkdeieGppk.rspdilLrQtsfkAleeevefaeedgeee 90 
                    +++d+++L++ese+aA+++ ++gy++NHl+  v+       di+ v+++lee+g+kl+  ++G++  +s+d+lL Q s  +++ +v+fa  dg +e
  VIMSS10081084 167 TWTDFKQLAKESEFAAWTL-IHGYTMNHLAFAVHrfkhrfsDIKFVKQRLEEKGFKLN--SDGEILkVSQDGLLFQVSSISERLPVTFA--DGVTE 257
                    6899***************.**************************************..9999999**********************..88888 PP

        DUF1338  91 egsvtarfgEieqRgaaltpkGralydellkeafpddeeelrkegLayfrieeglveaepilyedFlpasAagIFesn 168
                      +++a+++E++qR++++++  ++++ +++ke                            +++e+F+  +A++++es+
  VIMSS10081084 258 --TIPASYIEFTQRQVLPEF--KDVPLDEIKEF---------------------------HRREAFELDNANHVMEST 304
                    ..9*****************..88888889888...........................777777777777777776 PP



Or compare VIMSS10081084 to CDD or PaperBLAST