PaperBLAST – Find papers about a protein or its homologs

 

Align NP_001137314.1 to PF07092 (DUF1356)

NP_001137314.1 has 250 amino acids

Query:       DUF1356  [M=232]
Accession:   PF07092.15
Description: Protein of unknown function (DUF1356)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.2e-104  333.9   3.6   2.7e-104  333.6   3.6    1.0  1  NP_001137314.1  


Domain annotation for each sequence (and alignments):
>> NP_001137314.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.6   3.6  2.7e-104  2.7e-104       3     232 .]      19     248 ..      17     248 .. 0.98

  Alignments for each domain:
  == domain 1  score: 333.6 bits;  conditional E-value: 2.7e-104
         DUF1356   3 eskadelssekekkedvsqvpyveftgrdsvtCptCqGtGeiPreqekqlvaliPysdqrlkPrrtklyvllavllClllsglvvfflfPrsiav 97 
                     e+++d l +e+e++e+++q+pyveftgrds+tC tCqGtG+iP+eq+++lvaliP+sdqrl+P+rtk+yvll++llCll+sglvvfflfP+s++v
  NP_001137314.1  19 EDDRDGLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYIPTEQVNELVALIPHSDQRLRPQRTKQYVLLSILLCLLASGLVVFFLFPHSVLV 113
                     5667788999************************************************************************************* PP

         DUF1356  98 edvGlksstvafdkeekkvllnitnvlnisnsnyysvtvtqltaqvqylktvvGkvkksnvlligPldskqvdytvaseiadeltylykiCtllk 192
                     +d G+k+++v+f+k+++ v+l+i ++l+i nsn+y+v+vt+l++q+qy++tvv ++ ++nv+li P++++ v++t ++e+   ++y+y +Ct+++
  NP_001137314.1 114 DDDGIKVVKVTFNKQDSLVILTIMATLKIRNSNFYTVAVTSLSSQIQYMNTVVSTYVTTNVSLIPPRSEQLVNFTGKAEMGGPFSYVYFFCTVPE 208
                     *********************************************************************************************** PP

         DUF1356 193 ikvhnillliqvtvtlsylghseqlslesyeyvdCrents 232
                     i vhni+++++++v++sy+g ++q+sle+++yvdC++n++
  NP_001137314.1 209 ILVHNIVIFMRTSVKISYIGLMTQSSLETHHYVDCGGNST 248
                     **************************************97 PP



Or compare NP_001137314.1 to CDD or PaperBLAST