PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS7310 to PF07233 (DUF1425)

VIMSS7310 has 116 amino acids

Query:       DUF1425  [M=96]
Accession:   PF07233.16
Description: Protein of unknown function (DUF1425)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence  Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-12   33.8   0.4    1.9e-12   33.3   0.4    1.3  1  VIMSS7310  


Domain annotation for each sequence (and alignments):
>> VIMSS7310  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.4   1.9e-12   1.9e-12      27      95 ..      45     116 .]      35     116 .] 0.87

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 1.9e-12
    DUF1425  27 llrasvvlenksktdltlqYrFyWyDedGle.vepea..epwqsltlhgkesvtlqavapnprAskfrlyvr 95 
                 ++ s+v++nks++ l++ Y  yWyD  G++ +++++  +   ++ l+++e++++  ++p+ + +++rly++
  VIMSS7310  45 TTQKSAVIKNKSQQLLNISYHLYWYDHLGVTqIWENQqeSYSAQFLLKPQEQKSIDLTKPTVESKNYRLYLK 116
                57889************************85365554226678999************************85 PP



Or compare VIMSS7310 to CDD or PaperBLAST