PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS58566 to PF07286 (D-Glu_cyclase)

VIMSS58566 has 265 amino acids

Query:       D-Glu_cyclase  [M=143]
Accession:   PF07286.16
Description: D-glutamate cyclase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-65  204.3   0.0    4.8e-65  204.0   0.0    1.1  1  VIMSS58566  


Domain annotation for each sequence (and alignments):
>> VIMSS58566  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.0   0.0   4.8e-65   4.8e-65       1     143 []     117     259 ..     117     259 .. 1.00

  Alignments for each domain:
  == domain 1  score: 204.0 bits;  conditional E-value: 4.8e-65
  D-Glu_cyclase   1 VtFliGcSfsfeeaLleaglpvrhieegrnvpmYktnielepagvfsgklvvsmrpikkdkvekavqitsrlpkvhGapvhiGdpellgikdlskp 96 
                    V+F+iGcSfsfe+aLl+ag+ +rh+e grnv+mY+++i+++p+g+++g++vvsmrp+k++++ +a+q+tsr+p +hGap+h+Gdp+l+gi+dl++p
     VIMSS58566 117 VAFAIGCSFSFEQALLDAGIGLRHLELGRNVTMYRSSIATRPSGRLAGPTVVSMRPLKAAEAIRAIQVTSRFPMTHGAPLHLGDPALIGIRDLARP 212
                    89********************************************************************************************** PP

  D-Glu_cyclase  97 dyGdaveikegevPvFwacgvTpqeavmsaklelaithapghmlvtd 143
                    dyGd+v +  +e+P+FwacgvTpq+++ ++++el i+hapghmlv d
     VIMSS58566 213 DYGDPVPLAADEIPLFWACGVTPQAVLAEVQPELYISHAPGHMLVSD 259
                    *********************************************98 PP



Or compare VIMSS58566 to CDD or PaperBLAST