PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS5926475 to PF07286 (D-Glu_cyclase)

VIMSS5926475 has 257 amino acids

Query:       D-Glu_cyclase  [M=143]
Accession:   PF07286.16
Description: D-glutamate cyclase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-68  214.5   0.0    3.4e-68  214.2   0.0    1.1  1  VIMSS5926475  


Domain annotation for each sequence (and alignments):
>> VIMSS5926475  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.2   0.0   3.4e-68   3.4e-68       1     143 []     106     248 ..     106     248 .. 1.00

  Alignments for each domain:
  == domain 1  score: 214.2 bits;  conditional E-value: 3.4e-68
  D-Glu_cyclase   1 VtFliGcSfsfeeaLleaglpvrhieegrnvpmYktnielepagvfsgklvvsmrpikkdkvekavqitsrlpkvhGapvhiGdpellgikdlskp 96 
                    V F+iGcSfsfe+ L+++g+ +rh+eegrnvpmY+t+i+ ++ag f g+lvvsmrp++ +++ +avqitsr+p vhGap+hiG+p++lgi+dl+ p
   VIMSS5926475 106 VVFAIGCSFSFEDMLAREGIGLRHVEEGRNVPMYRTSIANRRAGIFGGQLVVSMRPLRGADAIRAVQITSRFPGVHGAPIHIGHPRELGIDDLNAP 201
                    89********************************************************************************************** PP

  D-Glu_cyclase  97 dyGdaveikegevPvFwacgvTpqeavmsaklelaithapghmlvtd 143
                    ++Gdav+i++ge+PvFwacgvTpq+a+m+akl++ai+h+pghml+td
   VIMSS5926475 202 EFGDAVTIRDGELPVFWACGVTPQTALMDAKLPIAIAHTPGHMLMTD 248
                    **********************************************8 PP



Or compare VIMSS5926475 to CDD or PaperBLAST