PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS18033 to PF07356 (DUF1481)

VIMSS18033 has 231 amino acids

Query:       DUF1481  [M=186]
Accession:   PF07356.16
Description: Protein of unknown function (DUF1481)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-78  246.4   0.9    1.1e-77  246.2   0.9    1.0  1  VIMSS18033  


Domain annotation for each sequence (and alignments):
>> VIMSS18033  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.2   0.9   1.1e-77   1.1e-77       1     186 []      42     227 ..      42     227 .. 0.99

  Alignments for each domain:
  == domain 1  score: 246.2 bits;  conditional E-value: 1.1e-77
     DUF1481   1 asGyiaddgavrlWrkddaqkeevvllsvyspyqgddtvvteYrwqegkLreirreglgkkpesvrlRfdkeGevvfmqrqldgrreslsedqialyql 99 
                 asG+++d+gavr+Wrkd+   ++v+ll+v+sp++++dt+++eYrwq ++L+ i+ ++++k+p ++r+Rfd++G+++fmqr++dg++++ls+dqi+ly++
  VIMSS18033  42 ASGFAEDQGAVRIWRKDSG--DNVHLLAVFSPWRSGDTTTREYRWQGDNLTLININVYSKPPVNIRARFDDRGDLSFMQRESDGEKQQLSNDQIDLYRY 138
                 8*****************9..6***************************************************************************** PP

     DUF1481 100 eAkrvlelskalrkgkvrLvQGrWngk..tvttCeGktvevefdqeaeaflakrqskssvdlsiawleapegsqLLlvadddfCrwePk 186
                 +A++++++s+alr+g+v L+QGrW++   tvttCeG+t+++++d++a a++++rqs+ssvd+s+awleapegsqLLlva++dfCrw+P+
  VIMSS18033 139 RADQIRQISDALRQGRVVLRQGRWHAMeqTVTTCEGQTIKPDLDSQAIAHIERRQSRSSVDVSVAWLEAPEGSQLLLVANSDFCRWQPN 227
                 *************************8777***********************************************************6 PP



Or compare VIMSS18033 to CDD or PaperBLAST