PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS2123988 to PF07411 (DUF1508)

VIMSS2123988 has 61 amino acids

Query:       DUF1508  [M=48]
Accession:   PF07411.16
Description: Domain of unknown function (DUF1508)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-25   74.6   0.1    2.6e-25   74.4   0.1    1.1  1  VIMSS2123988  


Domain annotation for each sequence (and alignments):
>> VIMSS2123988  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   0.1   2.6e-25   2.6e-25       1      48 []       8      56 ..       8      56 .. 0.98

  Alignments for each domain:
  == domain 1  score: 74.4 bits;  conditional E-value: 2.6e-25
       DUF1508  1 DknGkfrFrLkaaNgevIat.segYsskaaaengIesVkknapdaeveD 48
                  D++G+fr+rLk +N+++Iat +egY++k+++++gIe Vkk   ++ev+D
  VIMSS2123988  8 DAKGEFRWRLKSGNHQTIATgGEGYATKQNCQKGIEAVKKVTVETEVKD 56
                  889********************************************98 PP



Or compare VIMSS2123988 to CDD or PaperBLAST