PaperBLAST – Find papers about a protein or its homologs

 

Align SwissProt::A0A1X9QDU5 to PF07556 (DUF1538)

SwissProt::A0A1X9QDU5 has 271 amino acids

Query:       DUF1538  [M=211]
Accession:   PF07556.15
Description: Protein of unknown function (DUF1538)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence              Description
    ------- ------ -----    ------- ------ -----   ---- --  --------              -----------
    1.2e-69  219.9  16.8    1.4e-69  219.7  16.8    1.0  1  SwissProt::A0A1X9QDU5  


Domain annotation for each sequence (and alignments):
>> SwissProt::A0A1X9QDU5  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.7  16.8   1.4e-69   1.4e-69       1     210 [.      17     240 ..      17     241 .. 0.99

  Alignments for each domain:
  == domain 1  score: 219.7 bits;  conditional E-value: 1.4e-69
                DUF1538   1 ivlivlllqllvlklsleellkilvGlvlvilGlvlFllGvelgllpiGesigselakkk..............kllllllvgfllGf 74 
                            i++i++ +q++v+++++++l ++l+G+++v +Gl lFl+G+e +l+p+Ge ++s+l++++              ++++++l++f++G+
  SwissProt::A0A1X9QDU5  17 IAAIIFGFQYIVIRKRIQRLPQVLAGFFMVWVGLSLFLVGLEQALFPMGELMASQLTNTDflpaveqgvqrhwaDYYWVYLFAFAIGA 104
                            7899**********************************************************************9************* PP

                DUF1538  75 litlaEPalqvlakqveevssgaikkkvlilavaiGvglavalgllrillgislkyllipgyllvliltlfvpkefvaiAfDsgGvtt 162
                             +t+aEP+l++++ ++ e+s+g+i+  +l++ava+G++++++lg++ri++g++l++++++ y+lv+i tl +pk+++++AfDsgGvtt
  SwissProt::A0A1X9QDU5 105 STTIAEPSLIAVSIKAGEISGGTINPFMLRIAVALGMAFGITLGTWRIVMGWPLQWFVFAAYCLVIIQTLRSPKSIIPLAFDSGGVTT 192
                            **************************************************************************************** PP

                DUF1538 163 gpvtvplilalgvGvasalegknaledgFGlvalaslgpiiavlllgl 210
                            +++tvp+i+alg+G+a+++ g++al+dgFG++ala l+pii+v+ ++ 
  SwissProt::A0A1X9QDU5 193 STITVPIIAALGLGLAASIPGRSALMDGFGMIALACLFPIITVMGYAQ 240
                            ********************************************9976 PP



Or compare SwissProt::A0A1X9QDU5 to CDD or PaperBLAST