PaperBLAST – Find papers about a protein or its homologs

 

Align SwissProt::Q8BTE0 to PF07896 (DUF1674)

SwissProt::Q8BTE0 has 104 amino acids

Query:       DUF1674  [M=50]
Accession:   PF07896.16
Description: Protein of unknown function (DUF1674)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    1.8e-26   78.7   3.7    1.8e-26   78.7   3.7    1.7  2  SwissProt::Q8BTE0  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q8BTE0  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.21      0.21      32      37 ..      36      41 ..      33      46 .. 0.77
   2 !   78.7   3.7   1.8e-26   1.8e-26       4      50 .]      58     104 .]      55     104 .] 0.94

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.21
            DUF1674 32 gpEPtR 37
                       +pEP +
  SwissProt::Q8BTE0 36 KPEPAK 41
                       788876 PP

  == domain 2  score: 78.7 bits;  conditional E-value: 1.8e-26
            DUF1674   4 erraaaakpakefekdvnpktgEigGpkgpEPtRygDWerkGrvsDF 50 
                        e + ++++p ++f++dvnp t+E gGpkgpEPtRygDWerkGr++DF
  SwissProt::Q8BTE0  58 EDSPEEREPLQKFPDDVNPVTKEKGGPKGPEPTRYGDWERKGRCIDF 104
                        56678999*************************************** PP



Or compare SwissProt::Q8BTE0 to CDD or PaperBLAST