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Align NP_080285.2 to PF07946 (CCDC47)

NP_080285.2 has 483 amino acids

Query:       CCDC47  [M=327]
Accession:   PF07946.18
Description: PAT complex subunit CCDC47
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.9e-95  303.9   3.0      1e-94  303.4   3.0    1.2  1  NP_080285.2  


Domain annotation for each sequence (and alignments):
>> NP_080285.2  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  303.4   3.0     1e-94     1e-94       1     327 []     135     467 ..     135     467 .. 0.93

  Alignments for each domain:
  == domain 1  score: 303.4 bits;  conditional E-value: 1e-94
       CCDC47   1 dfklEililallllyvllyfiGkrkNkklakkwlkahkplleknFalvgfd....eekeksllkeesesefttyatGRrnvasllvtlklkkRqdlls 94 
                  +++lEil++  ll+y+++y+iGk+kN++la++w+++h++lle+nF+lvg d    e++++  l +e+e+ + ++++GR +++++l++l+++kRqdll+
  NP_080285.2 135 SYYLEILMVTGLLAYIMNYIIGKNKNSRLAQAWFNSHRELLESNFTLVGDDgtnkEATSTGKLNQENEHIYNLWCSGRVCCEGMLIQLRFLKRQDLLN 232
                  69***********************************************88**997777888************************************ PP

       CCDC47  95 lllelvlsfffesvkapkDrveitvylndgkestmdkfVfAivnKkemkklrkerydl.sltktkdnpk....lpeelvvmsEsaevtealltpellk 187
                  +l++++         + +D+v+i+v++nd++   md  VfA+ ++k++ +l+ke++dl ++++ k ++     lp++l+++sE+ evte +++++++ 
  NP_080285.2 233 VLARMM--------RPVSDQVQIKVTMNDED---MDTYVFAVGTRKALLRLQKEMQDLsEFCSDKPKSGakygLPDSLAILSEMGEVTEGMMDTKMVH 319
                  ******........5589************9...******************************555545566************************* PP

       CCDC47 188 alekagdlleyliitDqps........ekPeteeetkprkrlilslklpssks....dlealkpllelvleliDklakkkaklrpevlkkvkktReev 273
                  +l+ ++d +e+++++Dq s         +P +      +++l +++++p s +    d+e+l pl+++v++ iDk +  k++l++e ++k++k+R++v
  NP_080285.2 320 FLTHYADKIESVHFSDQFSgpkimqeeGQPLK--LPDTKRTLLFTFNVPGSGNtypkDMESLLPLMNMVIYSIDKAK--KFRLNREGKQKADKNRARV 413
                  *******************7777665433332..245568*********99444678********************..8****************** PP

       CCDC47 274 eekikkeaeeekaEeaqekkeekkkkereeklaklsaeeqrKleeKerkkeakK 327
                  ee++ k ++ +++E+aq ++eekk++e+e+ +++ ++e+qr+lee   ++e+kK
  NP_080285.2 414 EENFLKLTHVQRQEAAQSRREEKKRAEKERIMNEEDPEKQRRLEEAALRREQKK 467
                  *****************************************************9 PP



Or compare NP_080285.2 to CDD or PaperBLAST