NP_014871.3 has 302 amino acids
Query: MCP1_TM [M=105]
Accession: PF07950.15
Description: MDM10-complementing protein 1, transmembrane domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9e-32 96.2 1.4 7.2e-17 48.3 0.7 2.2 2 NP_014871.3
Domain annotation for each sequence (and alignments):
>> NP_014871.3
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 46.6 0.0 2.4e-16 2.4e-16 2 101 .. 68 166 .. 67 169 .. 0.78
2 ! 48.3 0.7 7.2e-17 7.2e-17 1 102 [. 182 275 .. 182 278 .. 0.86
Alignments for each domain:
== domain 1 score: 46.6 bits; conditional E-value: 2.4e-16
MCP1_TM 2 llglHvlvnrivPllvegdsskvglayvahglarhpvlsllayaaLvgvgvlHivsGlakwlglapel.kkkkrrrrwliingi.aaavaalwlaGg. 96
+++lH+++++i+P+++ +ds++++++++++++ + +++++Lv+ ++lH+ +G++ l + ++ k +++r+r l i++ +++++++l+Gg
NP_014871.3 68 YFPLHAANTLITPAVS-PDSAPDDVLMMVREI---LPS--ITTKLLVAGITLHVSAGVL--LRIVNNWnKPRRNRHRHLKISAEqDLSQDSIGLTGGi 157
89**************.***************...777..9******************..5554444444444445555544314556********7 PP
MCP1_TM 97 ....Lgvvk 101
+g++k
NP_014871.3 158 sgylFGLYK 166
777666666 PP
== domain 2 score: 48.3 bits; conditional E-value: 7.2e-17
MCP1_TM 1 pllglHvlvnrivPllvegdsskvglayvahglarhpvl.....sllayaaLvgvgvlHivsGlakwlglapelkkkkrrrrwliingiaaavaalwl 93
p+l++H+l++++vP+ + s++v++a++++ l +++ + +l+++a+L+ +gv+Hi sGl++++g++ k+++r++ +++a++ l+l
NP_014871.3 182 PVLIYHLLIMKWVPNSI---STEVDFASIKQLLSSKNRWwkwlgGLVPLAILLESGVYHIGSGLCRYFGVR---KMTSRKK-------WSTAINLLTL 266
6799*************...*************988777688888899***********************...6566777.......7777788888 PP
MCP1_TM 94 aGgLgvvkr 102
+G++++++
NP_014871.3 267 VGFVSLIRL 275
888777765 PP
Or compare NP_014871.3 to CDD or PaperBLAST