PaperBLAST – Find papers about a protein or its homologs

 

Align SwissProt::Q6FIN8 to PF07954 (DUF1689)

SwissProt::Q6FIN8 has 211 amino acids

Query:       DUF1689  [M=148]
Accession:   PF07954.15
Description: Protein of unknown function (DUF1689)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
      4e-47  146.4   0.3    5.7e-47  146.0   0.3    1.2  1  SwissProt::Q6FIN8  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q6FIN8  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.0   0.3   5.7e-47   5.7e-47       3     147 ..      19     181 ..      18     182 .. 0.98

  Alignments for each domain:
  == domain 1  score: 146.0 bits;  conditional E-value: 5.7e-47
            DUF1689   3 aaveFYeaDqkLdkeDRleLakdlqsiarkellagygafvavflaptayrryktgkikgvkvprikkkvsfllGlaalvvssqlaakyaynk 94 
                        +a eFY +DqkL+++DR +L+k++ +i+ ++++++ ++ +a++++p+ayr+y+tg++kgvk+pr     ++llG++++v+++++aak a++k
  SwissProt::Q6FIN8  19 WADEFYTRDQKLEDSDRRDLSKKYATISKASVVGAATGLSAGLGGPYAYRYYTTGALKGVKLPR-----TILLGVVSMVIMRNVAAKIAWDK 105
                        689*************************************************************.....*********************** PP

            DUF1689  95 klkkle.......................eksskqrqyevwkllkysslslwalYykkTaedPsrilkDPreltqe 147
                        +lkkl+                       +++s q++y ++k lky+++++wa+Y++ T+++P+r++++P++++q+
  SwissProt::Q6FIN8 106 ELKKLDpsgelkqnyksahktvddvslsdNSTSVQKKYGMMKFLKYRTAPRWAMYFEGTYQHPDRKFPNPDQMVQD 181
                        *****************************9******************************************9986 PP



Or compare SwissProt::Q6FIN8 to CDD or PaperBLAST