PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS6582118 to PF08020 (DUF1706)

VIMSS6582118 has 179 amino acids

Query:       DUF1706  [M=165]
Accession:   PF08020.15
Description: Protein of unknown function (DUF1706)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.1e-63  198.4   8.8    4.6e-63  198.2   8.8    1.0  1  VIMSS6582118  


Domain annotation for each sequence (and alignments):
>> VIMSS6582118  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.2   8.8   4.6e-63   4.6e-63       1     165 []       1     166 [.       1     166 [. 0.99

  Alignments for each domain:
  == domain 1  score: 198.2 bits;  conditional E-value: 4.6e-63
       DUF1706   1 MarpksKeeLieaieknfekliklidsipeeekreeeavkgvdkslrdvlayllgWhklllkWveeeqegkkvelPeegykWnqlgelnqefykkyq 97 
                   M++++sK+eL+e+iek++ek+ +++++i+e++k  +e+v++vd++++++l+y+lgW +lll+W+ +e +g +ve+P++gykWn+lg l+q+fykky 
  VIMSS6582118   1 MREYTSKKELKEEIEKKYEKYDAEFETISESQK--DEKVETVDRTPSENLSYQLGWVNLLLEWEAKEIAGYNVETPAPGYKWNNLGGLYQSFYKKYG 95 
                   9********************************..999*********************************************************** PP

       DUF1706  98 dlsleelleklkesheellelieslsdeeLfekkgrkWt...gkwtlgkyiqsntsspyknarkkirkwkk 165
                    +s++e+++kl+e+++e++++i++lsd+eLf+++ rkW+   + w+++k+i++nt++p++n+r kirkwk+
  VIMSS6582118  96 IYSIKEQRAKLREAVNEVYKWISTLSDDELFQAGNRKWAttkAMWPVYKWIHINTVAPFTNFRGKIRKWKR 166
                   ***************************************99999*************************97 PP



Or compare VIMSS6582118 to CDD or PaperBLAST