PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS353316 to PF08522 (DUF1735)

VIMSS353316 has 324 amino acids

Query:       DUF1735  [M=120]
Accession:   PF08522.14
Description: Domain of unknown function (DUF1735)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-26   79.3   1.0      2e-26   79.3   1.0    2.2  2  VIMSS353316  


Domain annotation for each sequence (and alignments):
>> VIMSS353316  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.3   1.0     2e-26     2e-26       3     118 ..      35     158 ..      33     160 .. 0.80
   2 ?   -1.9   2.2      0.29      0.29      47      47 ..     246     246 ..     198     303 .. 0.50

  Alignments for each domain:
  == domain 1  score: 79.3 bits;  conditional E-value: 2e-26
      DUF1735   3 nkvyieeaspsktltldeeelgdettislsvtvsgssp....kdvtvtlevdeslldeYnkangtn....y.kllPedsytlessevtikaG.svssa 90 
                  +  y+  +++ k+  l+++   d++t  l+v+++ + +    kd+t tl vd+++l+ Yn ++ +n    y kllPe+syt++ s+ ti++G  ++sa
  VIMSS353316  35 KRTYLI-ENGWKDYQLEVD---DDNTAILPVYFGINGTslndKDITLTLDVDPDTLERYNWEKYKNqkelYlKLLPEESYTFDASSWTIPSGeLNTSA 128
                  556777.566677777777...555555777766633334789*****************9988888899659*******************98999* PP

      DUF1735  91 pvkiklkdldkld..gktYvlPlritsvsg 118
                  ++ki+l+++++     + YvlPlri+s+ g
  VIMSS353316 129 YIKISLDKIKEVGslYNDYVLPLRINSSVG 158
                  ********555555899*********9876 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.29
      DUF1735  47 l 47 
                  l
  VIMSS353316 246 L 246
                  2 PP



Or compare VIMSS353316 to CDD or PaperBLAST