PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10105899 to PF08538 (DUF1749)

VIMSS10105899 has 361 amino acids

Query:       DUF1749  [M=299]
Accession:   PF08538.14
Description: Protein of unknown function (DUF1749)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.1e-74  234.6   0.0    9.6e-74  234.2   0.0    1.1  1  VIMSS10105899  


Domain annotation for each sequence (and alignments):
>> VIMSS10105899  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.2   0.0   9.6e-74   9.6e-74       7     263 ..      80     322 ..      73     349 .. 0.89

  Alignments for each domain:
  == domain 1  score: 234.2 bits;  conditional E-value: 9.6e-74
        DUF1749   7 pgllheyaerlvafeyetsgelkskallFigGLgdGlltvpyvkelanaldeagwsvvelqlsssyggwGtgsLkrDaeeieklveYlkktksGee 102
                     g+l +y  + +   ++t +   ++ ++FigGL+dGll+  y+++la ald+ +ws+v+l +sssy+g+Gt+sLk+Da+ei++l++ l ++    e
  VIMSS10105899  80 RGVLFKYGPKSIQVAFKTGE--YKQQVIFIGGLTDGLLATDYLEPLAIALDKEKWSLVQLLMSSSYSGFGTSSLKQDAQEIDQLINHLINK----E 169
                    48899999999999999988..5889***************************************************************99....6 PP

        DUF1749 103 kkekvvlmGHstGsqdvlyYltssnekdrekvdgailqapvsDReailkvieerkklkelvalakklvdkgkaeeilprelaekvgletpvsarRf 198
                    + e vvl+GHstG+qd++yY+  +      +v +ailqapvsDRe  ++ ++e   +  +++la +++++g++ee++pre   ++    p+sa+R+
  VIMSS10105899 170 NSEGVVLLGHSTGCQDIVYYMGTNAA-CSRAVRAAILQAPVSDREYKAT-LPE---TPAMIDLAANMIKEGRGEELMPREADPCA----PISAYRY 256
                    999*****************988755.7889**************9999.455...68899*******************98876....6****** PP

        DUF1749 199 lsLasvdgdDDfFssDlsdeklektfGkike.pllillsekDefvpekvdkeellerwkeavkkke 263
                     sL +  gdDD+FssDlsd++l++  G++++ p  +++s  De+vp+ vdk++l++r  +a+  +e
  VIMSS10105899 257 HSLCAYMGDDDMFSSDLSDDQLKTRLGHMANtPCQVIFSMGDEYVPDYVDKKALVNRLSKAMGGAE 322
                    ****************************9886999***********************99988443 PP



Or compare VIMSS10105899 to CDD or PaperBLAST