PaperBLAST – Find papers about a protein or its homologs

 

Align XP_001826766.1 to PF08538 (DUF1749)

XP_001826766.1 has 353 amino acids

Query:       DUF1749  [M=299]
Accession:   PF08538.14
Description: Protein of unknown function (DUF1749)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.1e-102  329.2   0.0   1.3e-102  328.9   0.0    1.0  1  XP_001826766.1  


Domain annotation for each sequence (and alignments):
>> XP_001826766.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  328.9   0.0  1.3e-102  1.3e-102       7     299 .]      12     348 ..       4     348 .. 0.96

  Alignments for each domain:
  == domain 1  score: 328.9 bits;  conditional E-value: 1.3e-102
         DUF1749   7 pgllheyaerlvafeyetsgelkskallFigGLgdGlltvpyvkelanaldeagwsvvelqlsssyggwGtgsLkrDaeeieklveYlkktksGe 101
                     pg+lh+y+e lv+fey+ts+  k+++llF+gGLgdGl t +y+ +la+al++++ws++ l+l+ssy +wG g L+rD++ei+++++Y+k++k+ +
  XP_001826766.1  12 PGILHHYTETLVTFEYTTSTVRKPHSLLFVGGLGDGLATTSYMADLAHALQPTEWSLFTLNLTSSYQSWGLGHLDRDTNEIAQCLNYIKEYKTEK 106
                     79*****************988*********************************************************************999* PP

         DUF1749 102 ekkekvvlmGHstGsqdvlyYltssnekd.............rekvdgailqapvsDReailkviee..........rkklkelvalakklvdkg 173
                     +++ k+vlmGHstGsq v++Yl+++n+++             r  +dgai+qapvsDReai  v++           r+ ++++vala++ v k+
  XP_001826766.1 107 FGNGKIVLMGHSTGSQCVVHYLSRPNPHTttpsfdptlehikRMVLDGAIMQAPVSDREAIKWVLKWgiggkspsevREIYDKVVALAREGVAKD 201
                     **************************9879***********9999******************999999*********************97666 PP

         DUF1749 174 ka...eeilprelaekvgl..etpvsarRflsLasvd.....gdDDfFssDlsdeklektfGkike......pllillsekDefvpekvdkeell 252
                     k    +++lp +l+ ++g+  +tp+s rR+lsL+s+d     g+DD+FssDls+e+l+ktfGkik+      +l++l+s+ D++vp++vdke+ll
  XP_001826766.1 202 KDsgfDTLLPINLTGTMGYppNTPISCRRLLSLVSPDspdspGEDDMFSSDLSEEQLAKTFGKIKQggllkhKLMVLFSGADQSVPDWVDKEQLL 296
                     54224799**************************************************************99*********************** PP

         DUF1749 253 erwkeavk....kkewsee.sGiikgAsHnveeesaeeaqkelvervlsflk 299
                     e+w+++++       w++e s +i++AsH++++++++e +k lve+v+ +l+
  XP_001826766.1 297 EKWRKVTDrdgeAPIWDQEhSAVIPNASHALSNDDQAEPRKFLVEKVMGYLR 348
                     ********777656899988*****************************996 PP



Or compare XP_001826766.1 to CDD or PaperBLAST