PaperBLAST – Find papers about a protein or its homologs

 

Align XP_011315628.1 to PF08550 (DUF1752)

XP_011315628.1 has 740 amino acids

Query:       DUF1752  [M=28]
Accession:   PF08550.13
Description: Fungal protein of unknown function (DUF1752)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.6e-11   28.5   0.9    5.6e-11   28.5   0.9    1.8  2  XP_011315628.1  


Domain annotation for each sequence (and alignments):
>> XP_011315628.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0      0.73      0.73       4      17 ..     310     323 ..     309     323 .. 0.85
   2 !   28.5   0.9   5.6e-11   5.6e-11       1      25 [.     482     506 ..     482     508 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 0.73
         DUF1752   4 yytkkkkdlpngeR 17 
                     y+  ++ d ++ +R
  XP_011315628.1 310 YFHQCSEDSSSNRR 323
                     89999999988888 PP

  == domain 2  score: 28.5 bits;  conditional E-value: 5.6e-11
         DUF1752   1 lWkyytkkkkdlpngeRLENlSWRl 25 
                     +W+ +++ k  lp++eRLENl+WR+
  XP_011315628.1 482 VWRSLSTLKQRLPSQERLENLTWRM 506
                     6***********************9 PP



Or compare XP_011315628.1 to CDD or PaperBLAST