PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS6577074 to PF08590 (DUF1771)

VIMSS6577074 has 206 amino acids

Query:       DUF1771  [M=64]
Accession:   PF08590.14
Description: Domain of unknown function (DUF1771)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.7e-25   73.2  12.0    4.8e-24   70.8  11.5    2.2  2  VIMSS6577074  


Domain annotation for each sequence (and alignments):
>> VIMSS6577074  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8  11.5   4.8e-24   4.8e-24       1      64 []       4      67 ..       4      67 .. 0.99
   2 ?   -0.1   0.0     0.068     0.068      18      31 ..     162     175 ..     160     177 .. 0.84

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 4.8e-24
       DUF1771  1 YerlRaeArkharkrnelfqkAaeAykrGdgaaAkelseeGkehgekaeeanrqAaeaIfeerN 64
                  Ye++Ra+A k+a+kr  lfq+A+ Ay++G++a+A+els+eGk +ge++e++nrqAa aI+ ++N
  VIMSS6577074  4 YEKFRALASKEAEKRGYLFQEAQHAYSAGNKAKAHELSQEGKLCGERMENYNRQAASAIYLYKN 67
                  9***********************************************************9988 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.068
       DUF1771  18 lfqkAaeAykrGdg 31 
                   + q+ +eAy+r ++
  VIMSS6577074 162 CIQEPQEAYSRPQH 175
                   89999****99776 PP



Or compare VIMSS6577074 to CDD or PaperBLAST