PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS6575478 to PF08594 (UPF0300)

VIMSS6575478 has 432 amino acids

Query:       UPF0300  [M=212]
Accession:   PF08594.14
Description: Uncharacterised protein family (UPF0300)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.2e-87  276.5   0.4    8.8e-87  276.0   0.4    1.2  1  VIMSS6575478  


Domain annotation for each sequence (and alignments):
>> VIMSS6575478  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.0   0.4   8.8e-87   8.8e-87       2     212 .]     149     357 ..     148     357 .. 0.99

  Alignments for each domain:
  == domain 1  score: 276.0 bits;  conditional E-value: 8.8e-87
       UPF0300   2 lkkfeelfkelseflengniplsvLihhvmLYdyYpeelkdalWkAvenyvseqvsseeytklhvkaaqkklgdiRlyLvkpediyvvknssdwiai 98 
                   l+++++lfk l+++l++g++pl+vLihhvmLY+yYp++l++alW+Ave+yv++  s e+y+++++ a+qkk+g+iR+yLv+p+di+++ +++++i++
  VIMSS6575478 149 LRNHQALFKYLCDYLRSGEFPLTVLIHHVMLYQYYPKSLQEALWAAVEHYVNN--SGEAYSTVQKLAVQKKIGNIRMYLVNPRDIFALGSTCNCIVV 243
                   799**************************************************..9***************************************** PP

       UPF0300  99 stknFqcyiqleekleekklkseeskieelaslaeseeelgWLllllsigsnasafPihaYlnakkkllesklpesllllrkeDellfkdkeeieel 195
                   s++nFq+y+ql+++l e++l++e + +++++++a+se+++gW++++++igsn++afPih Yln+kk+++  klpes+lll+++D ++fk+  ++++ 
  VIMSS6575478 244 SSSNFQSYVQLRKPLLENNLPYEIDGFDKILQCANSEADIGWIAMIHCIGSNGYAFPIHLYLNMKKNIFLGKLPESTLLLYNSDGAIFKNPPSSKKE 340
                   ************************************************************************************************* PP

       UPF0300 196 eeleeelledlakcesf 212
                   ++++++ll dl+kc++f
  VIMSS6575478 341 CDFYNQLLLDLCKCRQF 357
                   **************997 PP



Or compare VIMSS6575478 to CDD or PaperBLAST