PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10096974 to PF08719 (NADAR)

VIMSS10096974 has 599 amino acids

Query:       NADAR  [M=163]
Accession:   PF08719.15
Description: NADAR domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-28   86.6   0.0    1.8e-28   86.0   0.0    1.2  1  VIMSS10096974  


Domain annotation for each sequence (and alignments):
>> VIMSS10096974  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0   0.0   1.8e-28   1.8e-28      52     161 ..     475     584 ..     448     586 .. 0.87

  Alignments for each domain:
  == domain 1  score: 86.0 bits;  conditional E-value: 1.8e-28
          NADAR  52 fkdeea......aekilaakspkeakalgr....kvrnfdeedWeevkeevveegnlaKFtqneelrelLlaTgdreLveasprDriWGiGlkadd 137
                    f + e+      +eki++a+sp+ea+ +gr    +  +  ++dWe+vk+ev+++++ +KF++ ++l+++Ll+T  ++Lveasp+D +WG G  ++ 
  VIMSS10096974 475 FVGVENpkaydcVEKIRTARSPEEAALIGRstlrQKPELVRNDWEDVKIEVMYKALKCKFSTYPHLKSMLLSTIGTVLVEASPHDLFWGGG--RE- 567
                    4443333457779****889**********999844555567*************************************************..55. PP

          NADAR 138 aaenrekwkGeNlLGkaLmevRee 161
                           ++G N LG++Lm++R+e
  VIMSS10096974 568 -------GEGLNYLGRLLMQLRSE 584
                    .......78*************86 PP



Or compare VIMSS10096974 to CDD or PaperBLAST