PaperBLAST – Find papers about a protein or its homologs

 

Align A1T297 to PF08768 (THAP4_heme-bd)

A1T297 has 164 amino acids

Query:       THAP4_heme-bd  [M=151]
Accession:   PF08768.15
Description: THAP4-like, heme-binding beta-barrel domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-57  177.9   0.0    8.3e-57  177.7   0.0    1.0  1  A1T297    


Domain annotation for each sequence (and alignments):
>> A1T297  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.7   0.0   8.3e-57   8.3e-57       2     151 .]      12     162 ..      11     162 .. 0.96

  Alignments for each domain:
  == domain 1  score: 177.7 bits;  conditional E-value: 8.3e-57
  THAP4_heme-bd   2 lgplawLlGtWeGeGegeyptieefeygeeiefshdgkpflnYesrtwrldegkplhrEtGylrlepgtgevelllahptGvveleeGevkee..k 95 
                    +++la+LlGtW GeG+geyptie+f y+eei+f h gkpfl+Y +rt+ +d+g+plh+EtGylr   + +++e++lahptG++e++eG++++   +
         A1T297  12 VAALAPLLGTWVGEGSGEYPTIEPFGYTEEITFGHVGKPFLTYAQRTRAADDGRPLHAETGYLR-ASAPDRIEWILAHPTGITEIQEGQLTADgdG 106
                    789*************************************************99**********.7999*********************966678 PP

  THAP4_heme-bd  96 ktlelesdaiartstakevtaakrlyglvdgdLeyavemaavgtplqehlsatLkr 151
                     ++el s +i+r+ +akevt++ r+++l  ++L+y+++maavg+plq+hlsa L+r
         A1T297 107 LRMELVSSSIGRSGSAKEVTDVGRSIELRGDTLTYTLRMAAVGQPLQHHLSAVLRR 162
                    889999**********************9889**********************98 PP



Or compare A1T297 to CDD or PaperBLAST