PaperBLAST – Find papers about a protein or its homologs

 

Align NP_001323382.1 to PF08768 (THAP4_heme-bd)

NP_001323382.1 has 180 amino acids

Query:       THAP4_heme-bd  [M=151]
Accession:   PF08768.15
Description: THAP4-like, heme-binding beta-barrel domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-55  173.3   0.0    2.2e-55  173.1   0.0    1.0  1  NP_001323382.1  


Domain annotation for each sequence (and alignments):
>> NP_001323382.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.1   0.0   2.2e-55   2.2e-55       2     151 .]      34     179 ..      33     179 .. 0.97

  Alignments for each domain:
  == domain 1  score: 173.1 bits;  conditional E-value: 2.2e-55
   THAP4_heme-bd   2 lgplawLlGtWeGeGegeyptieefeygeeiefshdgkpflnYesrtwrldegkplhrEtGylrlepgtgevelllahptGvveleeGevkeekk 96 
                     ++pl+ LlGtW+G+Gegeypti +f+ygeei+fsh gkp+++Y+++tw+l++g+p+h+E+Gy+r   ++g++e+++a++tG+ve+++G+++  ++
  NP_001323382.1  34 VAPLSYLLGTWRGQGEGEYPTIPSFRYGEEIRFSHSGKPVIAYTQKTWKLESGAPMHAESGYFR-PRPDGSIEVVIAQSTGLVEVQKGTYNVDEQ 127
                     589*************************************************************.68899*********************9999 PP

   THAP4_heme-bd  97 tlelesdaiartstakevtaakrlyglvdgdLeyavemaavgtplqehlsatLkr 151
                     +++l+sd +    +a++v++++r+++lvdg+L+y+v+m+++++plq+hl+a L++
  NP_001323382.1 128 SIKLKSDLV---GNASKVKEISREFELVDGKLSYVVRMSTTTNPLQPHLKAILDK 179
                     *******88...68999**********************************9987 PP



Or compare NP_001323382.1 to CDD or PaperBLAST