PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS932185 to PF08909 (DUF1854)

VIMSS932185 has 861 amino acids

Query:       DUF1854  [M=130]
Accession:   PF08909.15
Description: Domain of unknown function (DUF1854)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-35  107.7   0.5    6.3e-35  106.1   0.1    2.1  2  VIMSS932185  


Domain annotation for each sequence (and alignments):
>> VIMSS932185  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.23      0.23     105     126 ..     695     716 ..     673     717 .. 0.84
   2 !  106.1   0.1   6.3e-35   6.3e-35       1     128 [.     734     858 ..     734     860 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.23
      DUF1854 105 DsdgnryeipdlkaLdkksrkl 126
                  ++dgn  ei d++ L+++s k+
  VIMSS932185 695 SKDGNGKEIHDIRILNPRSTKI 716
                  6788888999999999999875 PP

  == domain 2  score: 106.1 bits;  conditional E-value: 6.3e-35
      DUF1854   1 yegvepvrafPisapdeyislvdadgkElaliedladLdeesrklleeeLarrefvpeIkrilsvsekatpseweveTdrGettfvlkgeedirrlss 98 
                  y++++p+ +fPi++p ++i+++++dgkEl+l+ed+++Ld+es k+le++L ++++v+++ +i++++ k++++ew++ Td+G  +  + g++++ ++++
  VIMSS932185 734 YRDLIPKALFPITNP-KFIGFYTDDGKELFLLEDYSKLDSESLKVLESALLYNNLVFKVVKINNINIKGDQLEWDLVTDKGVSKTFTLGRRNVVVFEK 830
                  899************.********************************************************************************99 PP

      DUF1854  99 krllitDsdgnryeipdlkaLdkksrklLe 128
                  k ++++D+++n yei +++++dk+s++lL 
  VIMSS932185 831 K-VVLIDRNDNLYEI-NMESIDKRSLRLLL 858
                  9.9999*********.************96 PP



Or compare VIMSS932185 to CDD or PaperBLAST