PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS3497576 to PF08924 (Rv2525c_GlyHyd-like)

VIMSS3497576 has 280 amino acids

Query:       Rv2525c_GlyHyd-like  [M=198]
Accession:   PF08924.15
Description: Rv2525c-like, glycoside hydrolase-like domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-55  175.0   2.8    1.7e-55  174.3   2.8    1.3  1  VIMSS3497576  


Domain annotation for each sequence (and alignments):
>> VIMSS3497576  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.3   2.8   1.7e-55   1.7e-55       2     198 .]      50     230 ..      49     230 .. 0.97

  Alignments for each domain:
  == domain 1  score: 174.3 bits;  conditional E-value: 1.7e-55
  Rv2525c_GlyHyd-like   2 alkaagyravgrYlsgkrrp.araca.qknltpeevatilaaGlrlvpiyqggqdeaadftraaaqGvadAadAvaaakalGfpagspIY 89 
                          ++k+ag+ +++rY+s+ rrp +++++ +k++t +e+++  ++Gl+++++yq+g++e+ad++++aa+++++A +A+a++ a+G+p+++pIY
         VIMSS3497576  50 SIKNAGHLGAVRYVSQ-RRPgTESWMiGKPVTLAETRSFEQNGLKTASVYQYGKAETADWKNGAAGAATHAPQAIALHVAAGGPKNRPIY 138
                          69**************.5777********************************************************************* PP

  Rv2525c_GlyHyd-like  90 faVDldaydsevtaavlpYfrgwqealgaagykvGvYgsrnvckfvsdmstgfsgnlyplpdnWageaglgeelpqhaw......hpaar 173
                          +a+D++++ se+t+++ pY+++++ al+aagy++GvYg++nv++                   Wa+++glge++++h+w      hp+++
         VIMSS3497576 139 VAIDDNPSWSEYTNQIRPYLQAFNVALSAAGYQLGVYGNYNVID-------------------WAIADGLGEFFWMHNWgsegkiHPRTT 209
                          ********************************************...................*************************** PP

  Rv2525c_GlyHyd-like 174 ihQyagdvtetsggvtiigiDrnav 198
                          ihQ+++d+++ +g     giD n+v
         VIMSS3497576 210 IHQIRIDKDNLEGV----GIDMNNV 230
                          ******99988765....9999875 PP



Or compare VIMSS3497576 to CDD or PaperBLAST