PaperBLAST – Find papers about a protein or its homologs

 

Align Q5U2Q3 to PF08925 (DUF1907)

Q5U2Q3 has 315 amino acids

Query:       DUF1907  [M=285]
Accession:   PF08925.15
Description: Domain of Unknown Function (DUF1907)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.7e-132  426.0   0.0   4.2e-132  425.8   0.0    1.0  1  Q5U2Q3    


Domain annotation for each sequence (and alignments):
>> Q5U2Q3  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  425.8   0.0  4.2e-132  4.2e-132       1     285 []      20     303 ..      20     303 .. 0.99

  Alignments for each domain:
  == domain 1  score: 425.8 bits;  conditional E-value: 4.2e-132
  DUF1907   1 lqkaLkknfeevsvsvvdcPDLrkaPfklaaeglcgkeriadvGgvpyLlPlvkldkvydlkelakkieeeekafliGagagpfkvvgvncelianlsveee 102
              lqk+Lk+nf++v+vsvvdcPDL+k+Pf++  +g+cg++ria+vGgvpyLlPlv+++kvydl+e+ak+i + + af++Gagagpf+++g n+e+++ +++++e
   Q5U2Q3  20 LQKGLKDNFAHVQVSVVDCPDLTKEPFTFPVKGICGQTRIAEVGGVPYLLPLVNKKKVYDLNEIAKEI-KLPGAFILGAGAGPFQTLGFNSEFMPIVQTASE 120
              799*****************************************************************.******************************999 PP

  DUF1907 103 kkkvkngsrvakvekedekvvllekleksesdtrfallaNlfvsegkpgkvlkvkakkrtgkksfvecirkaLekaygdkvvglgGvflikkGkaklHvmp. 203
              +++ +ngs++a+ +++d+k+ llek++++  d  +allaNlf+seg+pgkv++v+akkrtg+++fv+c+r++Lek+ygdk+vg+gG+fl++kGk+k H+mp 
   Q5U2Q3 121 HHQPVNGSYFARANPADGKC-LLEKYSQKYPDFGCALLANLFASEGQPGKVIEVQAKKRTGEHNFVSCMRQTLEKHYGDKPVGMGGTFLVQKGKVKAHIMPa 221
              99*****************6.56*****999**********************************************************************9 PP

  DUF1907 204 dfsklplkseeevnkWLkfyelkaplvalgvlvskdpgldLrleHtHcfseegegGHYhydttpdeveYegYfnvaeklyri 285
              +fs+++l+s+e+vn+WL+fye+kaplv+l v+vskdpgldLrleHtH fs++gegGHYhydttpd+veY+gYf +a+ lyri
   Q5U2Q3 222 EFSSCSLNSDEAVNQWLNFYEMKAPLVCLPVFVSKDPGLDLRLEHTHFFSHHGEGGHYHYDTTPDTVEYLGYFSPAQFLYRI 303
              *********************************************************************************8 PP



Or compare Q5U2Q3 to CDD or PaperBLAST