PaperBLAST – Find papers about a protein or its homologs

 

Align biolip::1bd2D to PF09291 (DUF1968)

biolip::1bd2D has 190 amino acids

Query:       DUF1968  [M=81]
Accession:   PF09291.14
Description: Domain of unknown function (DUF1968)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-32   98.2   2.4    1.7e-32   97.6   2.4    1.3  1  biolip::1bd2D  


Domain annotation for each sequence (and alignments):
>> biolip::1bd2D  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6   2.4   1.7e-32   1.7e-32       1      74 [.     117     183 ..     117     189 .. 0.95

  Alignments for each domain:
  == domain 1  score: 97.6 bits;  conditional E-value: 1.7e-32
        DUF1968   1 PavYqLkspkssdtsvCLfTDFdsqvnvsqskeseviktdktvldmksldsKSngavaWsnksdfkCqdtfkee 74 
                    PavYqL+++k    svCLfTDFdsq+nvsqsk+s+v++tdktvldm+   +KSn+avaWsnksdf+C+++f+++
  biolip::1bd2D 117 PAVYQLRDSK----SVCLFTDFDSQTNVSQSKDSDVYITDKTVLDMR---FKSNSAVAWSNKSDFACANAFNNS 183
                    9******997....7******************************98...7*********************94 PP



Or compare biolip::1bd2D to CDD or PaperBLAST