PaperBLAST – Find papers about a protein or its homologs

 

Align biolip::5l2kD to PF09291 (DUF1968)

biolip::5l2kD has 185 amino acids

Query:       DUF1968  [M=81]
Accession:   PF09291.14
Description: Domain of unknown function (DUF1968)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-38  115.6   5.7    6.4e-38  115.0   5.7    1.3  1  biolip::5l2kD  


Domain annotation for each sequence (and alignments):
>> biolip::5l2kD  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.0   5.7   6.4e-38   6.4e-38       1      69 [.     117     185 .]     117     185 .] 0.99

  Alignments for each domain:
  == domain 1  score: 115.0 bits;  conditional E-value: 6.4e-38
        DUF1968   1 PavYqLkspkssdtsvCLfTDFdsqvnvsqskeseviktdktvldmksldsKSngavaWsnksdfkCqd 69 
                    PavYqL+++kssd+svCLfTDFdsq+nvsqsk+s+v++tdk vldm+s+d+KSn+avaWsnksdf+C++
  biolip::5l2kD 117 PAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFACAN 185
                    9******************************************************************86 PP



Or compare biolip::5l2kD to CDD or PaperBLAST