PaperBLAST – Find papers about a protein or its homologs

 

Align biolip::6vrnD to PF09291 (DUF1968)

biolip::6vrnD has 188 amino acids

Query:       DUF1968  [M=81]
Accession:   PF09291.14
Description: Domain of unknown function (DUF1968)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-39  120.7   6.0    2.6e-39  119.5   6.0    1.6  1  biolip::6vrnD  


Domain annotation for each sequence (and alignments):
>> biolip::6vrnD  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.5   6.0   2.6e-39   2.6e-39       1      72 [.     117     188 .]     117     188 .] 0.99

  Alignments for each domain:
  == domain 1  score: 119.5 bits;  conditional E-value: 2.6e-39
        DUF1968   1 PavYqLkspkssdtsvCLfTDFdsqvnvsqskeseviktdktvldmksldsKSngavaWsnksdfkCqdtfk 72 
                    PavYqL+++kssd+svCLfTDFdsq+nvsqsk+s+v++tdk vldm+s+d+KSn+avaWsnksdf+C+++f+
  biolip::6vrnD 117 PAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFACANAFN 188
                    9*********************************************************************97 PP



Or compare biolip::6vrnD to CDD or PaperBLAST