PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS7626123 to PF09323 (DUF1980)

VIMSS7626123 has 271 amino acids

Query:       DUF1980  [M=108]
Accession:   PF09323.14
Description: DUF1980 N-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.1e-37  112.5   7.6    9.3e-37  112.0   7.6    1.3  1  VIMSS7626123  


Domain annotation for each sequence (and alignments):
>> VIMSS7626123  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.0   7.6   9.3e-37   9.3e-37       1     108 []       2     102 ..       2     102 .. 0.97

  Alignments for each domain:
  == domain 1  score: 112.0 bits;  conditional E-value: 9.3e-37
       DUF1980   1 lrfliLlgfalllfkLvlsgklskYInpkyayllylamvvllilalvqlvlwikeeekekcdcghdheeesklkkllvylllllPlllglllptatL 97 
                   +rfliL+g+++++++L++sgkl++YIn +y+yl+yl+mv+++ila+vql++w+ke +       h+h  +sk++kl +++lll+Pl +++l+pt++L
  VIMSS7626123   2 IRFLILAGYFEMTMYLYISGKLDQYINLHYSYLAYLSMVLSFILAIVQLYVWVKEIR------VHSH-LKSKIAKLSSIGLLLIPLAIAWLFPTVSL 91 
                   8******************************************************99......4445.9**************************** PP

       DUF1980  98 dssivkakgvh 108
                   ds++v+akg+h
  VIMSS7626123  92 DSTTVAAKGYH 102
                   *********97 PP



Or compare VIMSS7626123 to CDD or PaperBLAST