PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS7753369 to PF09393 (DUF2001)

VIMSS7753369 has 156 amino acids

Query:       DUF2001  [M=139]
Accession:   PF09393.14
Description: Phage tail tube protein
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-58  181.7   3.0    4.2e-58  181.5   3.0    1.0  1  VIMSS7753369  


Domain annotation for each sequence (and alignments):
>> VIMSS7753369  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.5   3.0   4.2e-58   4.2e-58       2     139 .]       4     147 ..       3     147 .. 0.99

  Alignments for each domain:
  == domain 1  score: 181.5 bits;  conditional E-value: 4.2e-58
       DUF2001   2 tleakdtisGtlGelfi....ngeelaevkkleakveltkeevkvlgklgkqhKvtgwkgtgtltlykvtSrfrkllaeyiktGkdtrfeiivkleD 94 
                   t++akdt+s++ +e+fi    ++++++++++leak+e++k+ev++lg+++k++K+tg + tg++t++++tS+fr+ll +y++tG+d++f+i+v++eD
  VIMSS7753369   4 TINAKDTVSAKKAECFItiegKRYNFMQAIDLEAKMEKNKSEVPILGRTTKGNKTTGSTNTGSATFHYNTSIFRELLYRYKETGEDIYFDIQVTNED 100
                   789********************************************************************************************** PP

       DUF2001  95 pea.vGkervvlkdvnldeltlakfeag.elleeevpFtFedfelld 139
                   p++ vG+++vvlkd+n+d+++++kf+a+ e+l+e+++FtFed+el++
  VIMSS7753369 101 PTSaVGRQTVVLKDCNMDSGIITKFDADgEYLDEDMDFTFEDWELVE 147
                   ********************************************986 PP



Or compare VIMSS7753369 to CDD or PaperBLAST