PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS71889 to PF09831 (DUF2058)

VIMSS71889 has 179 amino acids

Query:       DUF2058  [M=173]
Accession:   PF09831.13
Description: Uncharacterized protein conserved in bacteria (DUF2058)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-62  196.3  10.0    2.6e-62  196.2  10.0    1.0  1  VIMSS71889  


Domain annotation for each sequence (and alignments):
>> VIMSS71889  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.2  10.0   2.6e-62   2.6e-62       1     173 []       5     179 .]       5     179 .] 0.98

  Alignments for each domain:
  == domain 1  score: 196.2 bits;  conditional E-value: 2.6e-62
     DUF2058   1 sLqeQLlkaGLvdkkkakkakkekrkqkkqkkkgavdeakeaaeeakaekaerdrelnrqrkeeaekkalaaqirqlieenrlkreegevaynFtdgkk 99 
                 +LqeQLlkaGLv++kka k++++++k++ q+++     a++a+ee+k+++ erd++l++q+k++a +k+++aq++qlie+nr++  +g++ +nFtdg+ 
  VIMSS71889   5 TLQEQLLKAGLVTSKKAAKVERTAKKSRVQARE-----ARAAVEENKKAQLERDKQLSEQQKQAALAKEYKAQVKQLIEMNRITIANGDIGFNFTDGNL 98 
                 69**************************99977.....99*********************************************************** PP

     DUF2058 100 vkkiyvdeklqkqLvkGrlaivrl......eeeyelvpaevaekiaerdeelvvllne.eeeekdeddpYadyqiPDDLmW 173
                 +kki+vd+ +q+qL++Grlai+rl      e+ey+++pa+va+kia+rd++ +vl+++ ++ee+ded+pYad+++PDDLmW
  VIMSS71889  99 IKKIFVDKLTQAQLINGRLAIARLlvdnnsEGEYAIIPASVADKIAQRDASSIVLHSAlSAEEQDEDNPYADFKVPDDLMW 179
                 ***********************999998899**************************9********************** PP



Or compare VIMSS71889 to CDD or PaperBLAST