PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS141190 to PF09836 (DUF2063)

VIMSS141190 has 248 amino acids

Query:       DUF2063  [M=83]
Accession:   PF09836.13
Description: Putative DNA-binding domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-21   62.1   0.3    4.9e-21   61.2   0.3    1.5  1  VIMSS141190  


Domain annotation for each sequence (and alignments):
>> VIMSS141190  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.3   4.9e-21   4.9e-21       1      83 []       8      91 ..       8      91 .. 0.96

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 4.9e-21
      DUF2063  1 elqqaFaaalrdpd.pglsaarrlavYrnnvfnnlieaLaaaFpvlrallgeeffdalarafvrehpprspllreyGeeFpdfL 83
                 ++q++Fa+a+r ++ +++ ++ rl+vY ++++nn+ +++++++  + ++ + e++ +l + fvr+  +++p+++e+++eF++++
  VIMSS141190  8 QYQHRFAQAIRGGEaADGLPQDRLNVYIRLIRNNIYSFIDRCYTETLQYFDREEWGRLKEGFVRDACAQTPYFQEIPGEFLQYC 91
                 68*********77798889999***********************************************************996 PP



Or compare VIMSS141190 to CDD or PaperBLAST