PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS202855 to PF09938 (DUF2170)

VIMSS202855 has 137 amino acids

Query:       DUF2170  [M=137]
Accession:   PF09938.13
Description: Uncharacterized protein conserved in bacteria (DUF2170)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-41  128.0   0.4    1.3e-41  127.8   0.4    1.0  1  VIMSS202855  


Domain annotation for each sequence (and alignments):
>> VIMSS202855  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.8   0.4   1.3e-41   1.3e-41       2     137 .]       4     136 ..       3     136 .. 0.98

  Alignments for each domain:
  == domain 1  score: 127.8 bits;  conditional E-value: 1.3e-41
      DUF2170   2 wtleelaeaLaeaeevqedeaevevvegeeevLlvtlkeygdLpifvavsgeqilvealLveedevkd..raelneelLrtqklfPLssvgiekvdge 97 
                  +tl+++ + L ++++++ +++++++ +ge evL+v++ +++++p+fv+v+++qil++++L+ e+ev++  r+e+ e++L+++ ++PLs+++    + +
  VIMSS202855   4 HTLANHLNSLGNNSQTGFQFDCYPI-DGEVEVLQVNVVGREEIPVFVSVTDNQILCISYLWGENEVNQerRSEMFETMLELNIPMPLSAFA----KID 96 
                  68999999*****************.****************************************99999********************....*** PP

      DUF2170  98 dyYvlfGaLsakSslediveEietLadnvidaaealeeyl 137
                  d+Yv++GaLs++Ss+ +i +E+++L+dn++++++++ +yl
  VIMSS202855  97 DKYVVYGALSLQSSMLEIEQELAVLSDNCLEVIDEMVDYL 136
                  ************************************9996 PP



Or compare VIMSS202855 to CDD or PaperBLAST