VIMSS27488 has 336 amino acids
Query: LpxR [M=322]
Accession: PF09982.13
Description: Outer membrane protein LpxR
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.3e-77 246.2 0.7 2.7e-77 245.9 0.7 1.0 1 VIMSS27488
Domain annotation for each sequence (and alignments):
>> VIMSS27488
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 245.9 0.7 2.7e-77 2.7e-77 3 322 .] 7 336 .] 3 336 .] 0.94
Alignments for each domain:
== domain 1 score: 245.9 bits; conditional E-value: 2.7e-77
LpxR 3 lallllaspalAqe..........keekstlslqleNDlfagegsDryYTnGlrlswlsaeeek..kwlrelarllkplsksaesekrlglslgQkiyT 89
l+l+l + a+A+e ++++++++l +eND++ + D+yYT+G ++ + ++e + + +++++++l +++++ + +r+g+sl+Q +yT
VIMSS27488 7 LCLSLGI-FAWAKEviptpstpltPSKRYSINLMTENDGYINPYIDEYYTAGNQIGFSTKEFDFskNKAMKWSSYL-GFFNKSPRVTRFGISLAQDMYT 103
3333333.6799999999999999999999***********9989***********99998887776778888888.77889***************** PP
LpxR 90 Psdieaedpdp.dDrPYAGylylelglqsetkdeldslelslGvvGpaslaeqvQklvHkligseepkGWdnQlknepavnlsyerekrllekeadsgl 187
Ps +++ + d +PY Gyl ++l++++++++ ++ +++slG++G++sla q+Q+l+Hk+ +++++ GW++Qlkne++++l y+ k++ +++ +
VIMSS27488 104 PSLANRKLVHLhDNHPYGGYLRVNLNVYNRHQTFMELFTISLGTTGQDSLAAQTQRLIHKWGHDPQFYGWNTQLKNEFIFELHYQLLKKV-PLLKTRFF 201
*98888887764679***************************************************************************.9******* PP
LpxR 188 eldliphagaalGnvkteasagltlRlGknLpkdfgsarirpgseafapskskfgwyvFagaegryvarditLdGntfrdspsvdkeplvadlelGval 286
+++l+p ++++lGn++ + ++g ++R+G+nL++d+g ++++++ + ++p+++kf++y+Faga gr+ +i+++Gn+++++ ++e +v++ e+G+a+
VIMSS27488 202 SMELMPGFNVELGNARDYFQLGSLFRAGYNLDADYGVNKVNTAFDGGMPYSDKFSIYFFAGAFGRFQPLNIFIQGNSPETRGIANLEYFVYASEIGAAM 300
******************************************999999*************************************************** PP
LpxR 287 aykrvrlsytlvfrtkefeeqeeadqfGslslsvkf 322
+++ +r+++t++ +k f++q++++q+G+l+l ++f
VIMSS27488 301 MWRSLRVAFTITDISKTFQSQPKHHQIGTLELNFAF 336
********************************9987 PP
Or compare VIMSS27488 to CDD or PaperBLAST