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Align VIMSS27488 to PF09982 (LpxR)

VIMSS27488 has 336 amino acids

Query:       LpxR  [M=322]
Accession:   PF09982.13
Description: Outer membrane protein LpxR
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-77  246.2   0.7    2.7e-77  245.9   0.7    1.0  1  VIMSS27488  


Domain annotation for each sequence (and alignments):
>> VIMSS27488  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.9   0.7   2.7e-77   2.7e-77       3     322 .]       7     336 .]       3     336 .] 0.94

  Alignments for each domain:
  == domain 1  score: 245.9 bits;  conditional E-value: 2.7e-77
        LpxR   3 lallllaspalAqe..........keekstlslqleNDlfagegsDryYTnGlrlswlsaeeek..kwlrelarllkplsksaesekrlglslgQkiyT 89 
                 l+l+l +  a+A+e          ++++++++l +eND++ +   D+yYT+G ++ + ++e +   + +++++++l  +++++ + +r+g+sl+Q +yT
  VIMSS27488   7 LCLSLGI-FAWAKEviptpstpltPSKRYSINLMTENDGYINPYIDEYYTAGNQIGFSTKEFDFskNKAMKWSSYL-GFFNKSPRVTRFGISLAQDMYT 103
                 3333333.6799999999999999999999***********9989***********99998887776778888888.77889***************** PP

        LpxR  90 Psdieaedpdp.dDrPYAGylylelglqsetkdeldslelslGvvGpaslaeqvQklvHkligseepkGWdnQlknepavnlsyerekrllekeadsgl 187
                 Ps  +++ +   d +PY Gyl ++l++++++++ ++ +++slG++G++sla q+Q+l+Hk+ +++++ GW++Qlkne++++l y+  k++    +++ +
  VIMSS27488 104 PSLANRKLVHLhDNHPYGGYLRVNLNVYNRHQTFMELFTISLGTTGQDSLAAQTQRLIHKWGHDPQFYGWNTQLKNEFIFELHYQLLKKV-PLLKTRFF 201
                 *98888887764679***************************************************************************.9******* PP

        LpxR 188 eldliphagaalGnvkteasagltlRlGknLpkdfgsarirpgseafapskskfgwyvFagaegryvarditLdGntfrdspsvdkeplvadlelGval 286
                 +++l+p ++++lGn++ + ++g ++R+G+nL++d+g ++++++ + ++p+++kf++y+Faga gr+   +i+++Gn+++++   ++e +v++ e+G+a+
  VIMSS27488 202 SMELMPGFNVELGNARDYFQLGSLFRAGYNLDADYGVNKVNTAFDGGMPYSDKFSIYFFAGAFGRFQPLNIFIQGNSPETRGIANLEYFVYASEIGAAM 300
                 ******************************************999999*************************************************** PP

        LpxR 287 aykrvrlsytlvfrtkefeeqeeadqfGslslsvkf 322
                 +++ +r+++t++  +k f++q++++q+G+l+l ++f
  VIMSS27488 301 MWRSLRVAFTITDISKTFQSQPKHHQIGTLELNFAF 336
                 ********************************9987 PP



Or compare VIMSS27488 to CDD or PaperBLAST