PaperBLAST – Find papers about a protein or its homologs

 

Align SwissProt::Q5U2S1 to PF10176 (DUF2370)

SwissProt::Q5U2S1 has 221 amino acids

Query:       DUF2370  [M=224]
Accession:   PF10176.13
Description: Protein of unknown function (DUF2370)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    2.5e-15   42.9   6.5      2e-11   30.0   0.1    3.1  3  SwissProt::Q5U2S1  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q5U2S1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   1.0     0.001     0.001      32      64 ..      20      52 ..       6      59 .. 0.78
   2 !   30.0   0.1     2e-11     2e-11      39     126 ..      63     162 ..      53     169 .. 0.83
   3 !   10.2   0.1   2.5e-05   2.5e-05     187     218 ..     178     209 ..     168     215 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.001
            DUF2370 32 eeeekeekpPtYeeAaaDaaPpYwettilapgl 64
                       ++ ++ee+p   e+ a Da PpY  ++  ++++
  SwissProt::Q5U2S1 20 QQLQNEEEPGEREQTAGDAPPPYSSISAESAAY 52
                       56678999999************9888776655 PP

  == domain 2  score: 30.0 bits;  conditional E-value: 2e-11
            DUF2370  39 kpPtYeeAaaDaaPpYwettilapgles.............dev.lvdglpvGnifsfvwNllvsvsFqlvGFlltYlLHtthAakqGSraG 116
                        kpP+Y+ A+  + P+Y e++ + ++++              d+    d l +Gn   f+    +++ F  +GF+l++ L t+ A + G+  G
  SwissProt::Q5U2S1  63 KPPSYNVAT--TLPSYDEAERTKAEATIplvpgrdedfvgrDDFdDADQLRIGNDGIFMLTFFMAFLFNWIGFFLSFCLTTSAAGRYGAISG 152
                        799999876..58999998888887777788899777777633313699******************************************* PP

            DUF2370 117 LGitliqygf 126
                         G+ li++ +
  SwissProt::Q5U2S1 153 FGLSLIKWIL 162
                        ******9865 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 2.5e-05
            DUF2370 187 ewlayvlmilGlfiliksivdylrvkrleklv 218
                         wl +v+ +lG+++ ++ +++y +v+++ +++
  SwissProt::Q5U2S1 178 YWLWWVFLVLGFLLFLRGFINYAKVRKMPETF 209
                        69999**********************98776 PP



Or compare SwissProt::Q5U2S1 to CDD or PaperBLAST