NP_500282.2 has 536 amino acids
Query: NDNF [M=127]
Accession: PF10179.13
Description: Neuron-derived neurotrophic factor, first Fn(III) domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.4e-26 77.7 0.6 6.7e-15 41.5 0.5 4.2 4 NP_500282.2
Domain annotation for each sequence (and alignments):
>> NP_500282.2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 25.0 0.0 8.7e-10 8.7e-10 2 38 .. 181 220 .. 180 224 .. 0.93
2 ! 41.5 0.5 6.7e-15 6.7e-15 80 126 .. 223 270 .. 220 271 .. 0.93
3 ? 1.9 0.0 0.012 0.012 7 28 .. 430 448 .. 423 466 .. 0.71
4 ! 3.9 0.0 0.0028 0.0028 91 109 .. 491 509 .. 486 521 .. 0.83
Alignments for each domain:
== domain 1 score: 25.0 bits; conditional E-value: 8.7e-10
NDNF 2 tlkWkpsksvldkhaveY..Clvvnreh.nykslCaaeee 38
+++Wk s++v+++++ +Y C++v+r++ +++++C+++ee
NP_500282.2 181 LITWKISPQVRNAEPGRYriCTIVSRRDpEFAGMCDHVEE 220
699***********************999********997 PP
== domain 2 score: 41.5 bits; conditional E-value: 6.7e-15
NDNF 80 lqivCvgkktvqtv.seLkpdtqYyfdvFavdqkrntstaylgtfaet 126
+++Cv+++++++v +L++d++Y+++vF++d+kr+ts+ay++++++t
NP_500282.2 223 ETVKCVPQTNNTVViGSLRRDRTYFVTVFVRDHKRGTSSAYEVQTIQT 270
5899*****999888******************************998 PP
== domain 3 score: 1.9 bits; conditional E-value: 0.012
NDNF 7 psksvldkhaveYClvvnreh.n 28
+ ++ +v+YC+ reh n
NP_500282.2 430 RA----HDSHVKYCVYRRREHsN 448
43....47789******999963 PP
== domain 4 score: 3.9 bits; conditional E-value: 0.0028
NDNF 91 qtvseLkpdtqYyfdvFav 109
+t+ +L+p ++Y++d+ a
NP_500282.2 491 TTIGGLLPASTYRLDLLAT 509
79*************9886 PP
Or compare NP_500282.2 to CDD or PaperBLAST